STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D13TBC1 domain family member 13. (387 aa)    
Predicted Functional Partners:
nckipsd
NCK interacting protein with SH3 domain.
   
    0.770
rab35
RAB35, member RAS oncogene family b.
     
 0.761
LOC109994112
Si:dkey-16l2.16.
     
 0.761
ift27
Intraflagellar transport 27 homolog (Chlamydomonas).
     
 0.736
spout1
SPOUT domain containing methyltransferase 1.
      
 0.556
tbc1d19
TBC1 domain family, member 19.
      
 0.554
LOC110000981
TBC1 domain family, member 7.
      
 0.550
tbc1d23
TBC1 domain family, member 23.
      
 0.523
LOC110000869
Si:ch211-239f4.1.
     
 0.459
evi5
Ecotropic viral integration site 5b.
     
 0.459
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.