STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109985734Histone H2A; Belongs to the histone H2A family. (135 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.993
aifm1
Apoptosis inducing factor mitochondrion associated 1.
    
  0.846
LOC109990604
Lysine (K)-specific demethylase 6B, a.
    
 0.801
ENSLBEP00000002429
Lysine (K)-specific demethylase 6B, b.
    
 0.796
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.789
LOC109995113
Lysine (K)-specific demethylase 6A, like.
    
 0.789
ENSLBEP00000037722
Uncharacterized protein.
    
 0.789
ENSLBEP00000009844
Histone H2A; Belongs to the histone H2A family.
  
0.779
rps27a
Ribosomal protein S27a.
   
  0.778
LOC109991317
Histone H2A; Belongs to the histone H2A family.
  
0.774
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.