STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rassf3Ras association domain family member 3. (246 aa)    
Predicted Functional Partners:
LOC110004298
SARAH domain-containing protein.
    
 0.845
stk3
Serine/threonine kinase 3 (STE20 homolog, yeast).
    
 0.845
LOC109990457
F-box and WD repeat domain containing 11a.
    
 0.741
sav1
Salvador family WW domain containing protein 1.
    
 
 0.672
LOC109981845
Acyl-CoA synthetase long chain family member 5.
    
  0.568
LOC110001682
Acyl-CoA synthetase long chain family member 2.
    
  0.568
mdm4
MDM4 regulator of p53; Belongs to the MDM2/MDM4 family.
    
  0.568
LOC109984291
Acyl-CoA synthetase long chain family member 1b.
    
  0.568
acsl6
AMP-binding domain-containing protein.
    
  0.568
mdm2
MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.
    
  0.568
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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