STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000027417Ataxin 3. (221 aa)    
Predicted Functional Partners:
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.996
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.968
ubb
Ubiquitin B.
    
 0.968
LOC110000677
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.968
rps27a
Ribosomal protein S27a.
    
 0.967
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.949
ENSLBEP00000002046
Uncharacterized protein.
    
 0.936
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.936
LOC110004984
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.936
SPATA5
Spermatogenesis associated 5.
    
 0.936
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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