LOC110000195 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110000195

Uncharacterized protein. (609 aa)

Predicted Functional Partners:

aasdh

0.928

mrpl13

0.909

mrpl3

0.908

ENSLBEP00000029074

0.908

MRPL21

0.903

mrpl17

0.903

mrpl11

0.903

ENSLBEP00000030876

0.903

mrpl15

0.903

mrpl24

0.903

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000029074	ENSLBEP00000030876	ENSLBEP00000029074	ENSLBEP00000030876	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	MRP-L46 domain-containing protein.	0.914
ENSLBEP00000029074	LOC110000195	ENSLBEP00000029074	ENSLBEP00000027463	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.908
ENSLBEP00000029074	MRPL21	ENSLBEP00000029074	ENSLBEP00000001658	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L21.	0.998
ENSLBEP00000029074	aasdh	ENSLBEP00000029074	ENSLBEP00000026068	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Aminoadipate-semialdehyde dehydrogenase.	0.999
ENSLBEP00000029074	mrpl11	ENSLBEP00000029074	ENSLBEP00000009881	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.984
ENSLBEP00000029074	mrpl13	ENSLBEP00000029074	ENSLBEP00000008218	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.992
ENSLBEP00000029074	mrpl15	ENSLBEP00000029074	ENSLBEP00000030957	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L15.	0.970
ENSLBEP00000029074	mrpl17	ENSLBEP00000029074	ENSLBEP00000004891	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.992
ENSLBEP00000029074	mrpl24	ENSLBEP00000029074	ENSLBEP00000033785	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.975
ENSLBEP00000029074	mrpl3	ENSLBEP00000029074	ENSLBEP00000000587	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.984
ENSLBEP00000030876	ENSLBEP00000029074	ENSLBEP00000030876	ENSLBEP00000029074	MRP-L46 domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.914
ENSLBEP00000030876	LOC110000195	ENSLBEP00000030876	ENSLBEP00000027463	MRP-L46 domain-containing protein.	Uncharacterized protein.	0.903
ENSLBEP00000030876	MRPL21	ENSLBEP00000030876	ENSLBEP00000001658	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L21.	0.998
ENSLBEP00000030876	mrpl11	ENSLBEP00000030876	ENSLBEP00000009881	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.994
ENSLBEP00000030876	mrpl13	ENSLBEP00000030876	ENSLBEP00000008218	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.996
ENSLBEP00000030876	mrpl15	ENSLBEP00000030876	ENSLBEP00000030957	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L15.	0.998
ENSLBEP00000030876	mrpl17	ENSLBEP00000030876	ENSLBEP00000004891	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
ENSLBEP00000030876	mrpl24	ENSLBEP00000030876	ENSLBEP00000033785	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.991
ENSLBEP00000030876	mrpl3	ENSLBEP00000030876	ENSLBEP00000000587	MRP-L46 domain-containing protein.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997
LOC110000195	ENSLBEP00000029074	ENSLBEP00000027463	ENSLBEP00000029074	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.908