STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000027665Reverse transcriptase domain-containing protein. (472 aa)    
Predicted Functional Partners:
LOC109982950
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.800
LOC109978647
Heme-binding protein soul4.
    
 0.794
lyrm4
Si:ch211-152c8.4; Belongs to the complex I LYR family.
    
 0.794
rag2
Recombination activating gene 2.
   
 0.786
LOC109985360
BRCA1 associated RING domain 1.
    
 0.722
rpl21
Ribosomal protein L21.
   
   0.681
rps27a
Ribosomal protein S27a.
    
  0.677
LOC109990544
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.665
pla2g4a
Phospholipase A2.
    
 0.661
babam1
BRISC and BRCA1 A complex member 1.
    
 0.660
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.