STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109983989Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2582 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.912
USP34
Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.
   
 
0.857
ddb2
Damage-specific DNA binding protein 2.
    
 0.855
LOC109999085
MCL1 apoptosis regulator, BCL2 family member b.
    
 
 0.838
ENSLBEP00000008941
WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family.
    
 0.803
pex5
Peroxisomal biogenesis factor 5.
    
 0.790
LOC109995051
Peroxisomal biogenesis factor 5-like a.
    
 0.790
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.781
LOC109991202
Mothers against decapentaplegic homolog.
   
 0.775
LOC109981172
Mothers against decapentaplegic homolog.
   
 0.775
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.