STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cisd2CDGSH iron sulfur domain 2. (135 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.880
LOC109991969
DET1 and DDB1 associated 1.
    
 
 0.747
DDA1
DET1 and DDB1 associated 1.
    
 
 0.747
LOC110006100
Uncharacterized protein.
    
 
 0.623
ENSLBEP00000013020
RNA binding motif protein 39b.
    
 
 0.623
LOC109975248
Uncharacterized protein.
    
 
 0.623
lemd3
LEM domain containing 3.
    
 
 0.623
ndufs5
NADH:ubiquinone oxidoreductase subunit S5.
   
   0.541
LOC109985523
Cullin 4A; Belongs to the cullin family.
    
 
 0.446
cul4b
Cullin 4B; Belongs to the cullin family.
    
 
 0.446
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.