STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110002626ATP-binding cassette, sub-family D (ALD), member 1. (762 aa)    
Predicted Functional Partners:
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
  
0.936
pex19
Peroxisomal biogenesis factor 19.
    
 0.915
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
   
0.895
LOC109987654
ATP-binding cassette, sub-family D (ALD), member 2.
  
  
 
0.840
pex3
Peroxisomal biogenesis factor 3.
   
 0.835
pex14
Peroxisomal biogenesis factor 14.
   
 0.817
lmbrd1
LMBR1 domain containing 1.
    
 0.787
pxmp4
Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.
   
 
 0.785
LOC110004402
Peroxisomal biogenesis factor 13.
   
 
 0.782
LOC109976526
Peroxin-13_N domain-containing protein.
   
 
 0.782
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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