STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109980617Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (789 aa)    
Predicted Functional Partners:
LOC109981964
Neuropilin; Belongs to the neuropilin family.
    
 0.937
LOC109989895
Neuropilin; Belongs to the neuropilin family.
    
 0.801
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.758
mst1r
Macrophage stimulating 1 receptor b.
    
 0.758
LOC109980643
Macrophage stimulating 1 receptor a.
    
 0.758
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.516
ENSLBEP00000011796
C-type lectin domain-containing protein.
    
  0.515
LOC109994546
Plexin A1.
    
 0.486
PLXND1
Plexin D1.
    
 0.486
PLXNA2
Sema domain-containing protein.
    
0.486
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.