STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)    
Predicted Functional Partners:
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.999
sf3b3
Splicing factor 3b, subunit 3.
   
 
 0.999
prpf8
Pre-mRNA processing factor 8.
   
 0.999
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.998
naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
   
 0.998
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.997
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.997
snrpg
Small nuclear ribonucleoprotein G.
   
  0.997
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.