STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109994794Charged multivesicular body protein 6a. (214 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein sorting 25 homolog.
   
 0.986
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.985
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.983
chmp2a
Charged multivesicular body protein 2A.
   
 0.980
LOC109979052
Vacuolar protein sorting 25 homolog.
   
 0.975
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.967
LOC109975393
Charged multivesicular body protein 3.
    
 0.956
LOC109992570
Charged multivesicular body protein 3-like.
    
 0.956
LOC109987145
Charged multivesicular body protein 4Bb.
    
0.954
LOC110004497
Charged multivesicular body protein 4C.
    
0.954
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.