LOC109995570 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109995570

Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (318 aa)

Predicted Functional Partners:

met

0.761

mst1r

0.761

LOC109980643

0.761

LOC109983664

0.621

LOC109989518

0.621

LOC109990841

0.621

LOC109996767

0.621

LOC109992374

0.607

ENSLBEP00000004737

0.604

LOC109991775

0.604

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000004737	LOC109983664	ENSLBEP00000004737	ENSLBEP00000007094	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.819
ENSLBEP00000004737	LOC109989518	ENSLBEP00000004737	ENSLBEP00000013413	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.819
ENSLBEP00000004737	LOC109990841	ENSLBEP00000004737	ENSLBEP00000028453	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Uncharacterized protein; Belongs to the calmodulin family.	0.819
ENSLBEP00000004737	LOC109995570	ENSLBEP00000004737	ENSLBEP00000028867	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.604
ENSLBEP00000004737	LOC109996767	ENSLBEP00000004737	ENSLBEP00000035310	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Calmodulin.	0.819
LOC109980643	LOC109995570	ENSLBEP00000027888	ENSLBEP00000028867	Macrophage stimulating 1 receptor a.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.761
LOC109980643	met	ENSLBEP00000027888	ENSLBEP00000003943	Macrophage stimulating 1 receptor a.	MET proto-oncogene, receptor tyrosine kinase.	0.875
LOC109980643	mst1r	ENSLBEP00000027888	ENSLBEP00000024621	Macrophage stimulating 1 receptor a.	Macrophage stimulating 1 receptor b.	0.878
LOC109983664	ENSLBEP00000004737	ENSLBEP00000007094	ENSLBEP00000004737	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109983664	LOC109991775	ENSLBEP00000007094	ENSLBEP00000006644	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109983664	LOC109992374	ENSLBEP00000007094	ENSLBEP00000012460	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109983664	LOC109995570	ENSLBEP00000007094	ENSLBEP00000028867	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.621
LOC109989518	ENSLBEP00000004737	ENSLBEP00000013413	ENSLBEP00000004737	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109989518	LOC109991775	ENSLBEP00000013413	ENSLBEP00000006644	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109989518	LOC109992374	ENSLBEP00000013413	ENSLBEP00000012460	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109989518	LOC109995570	ENSLBEP00000013413	ENSLBEP00000028867	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.621
LOC109990841	ENSLBEP00000004737	ENSLBEP00000028453	ENSLBEP00000004737	Uncharacterized protein; Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109990841	LOC109991775	ENSLBEP00000028453	ENSLBEP00000006644	Uncharacterized protein; Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109990841	LOC109992374	ENSLBEP00000028453	ENSLBEP00000012460	Uncharacterized protein; Belongs to the calmodulin family.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.819
LOC109990841	LOC109995570	ENSLBEP00000028453	ENSLBEP00000028867	Uncharacterized protein; Belongs to the calmodulin family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.621