STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109996175Programmed cell death 10b. (210 aa)    
Predicted Functional Partners:
ccm2
CCM2 scaffold protein.
    
 
 0.952
LOC109986917
MOB family member 4, phocein.
   
 
 0.951
slmap
Sarcolemma associated protein a.
    
 
 0.936
cttnbp2
Cortactin binding protein 2.
    
 
 0.932
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.923
LOC109982810
Uncharacterized protein.
    
 
 0.921
LOC109999342
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.915
cttnbp2nl
CTTNBP2 N-terminal like b.
    
 
 0.907
LOC109997231
CTTNBP2 N-terminal like a.
    
 
 0.907
LOC109980903
Sarcolemma associated protein b.
    
 
 0.905
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.