STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109993216Peripherin 2b (retinal degeneration, slow). (343 aa)    
Predicted Functional Partners:
rom1
Retinal outer segment membrane protein 1b.
  
 
0.836
npy2r
Neuropeptide Y receptor Y2; Belongs to the G-protein coupled receptor 1 family.
   
   0.730
LOC109995365
Somatolactin alpha.
   
    0.730
LOC109989318
Growth hormone 1.
   
    0.730
LOC109988093
Neuropeptide Y receptor Y7; Belongs to the G-protein coupled receptor 1 family.
   
   0.730
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.688
mst1r
Macrophage stimulating 1 receptor b.
    
  0.688
LOC109980643
Macrophage stimulating 1 receptor a.
    
  0.688
LOC110003718
Opticin.
   
  
 0.650
LOC109989453
Si:dkeyp-86f7.4.
    
 
 0.631
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.