STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109987904Zinc finger, RAN-binding domain containing 1b. (761 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.924
ubb
Ubiquitin B.
   
 0.914
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.909
ubxn7
UBX domain protein 7.
   
   0.883
LOC109976847
Ubiquitin-like domain-containing protein.
    
  0.848
LOC109975995
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.841
LOC109990925
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.841
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.786
LOC109986361
APC_N_CC domain-containing protein.
    
  0.746
LOC110002655
APC regulator of WNT signaling pathway 2.
    
  0.746
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.