LOC109982502 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109982502

Cytoplasmic polyadenylation element binding protein 2. (448 aa)

Predicted Functional Partners:

cpeb1

0.885

CPEB4

0.876

LOC109998436

0.876

cdk1

0.862

aurka

0.860

LOC110004130

0.846

LOC109992113

0.833

LOC110001534

0.817

CCNB2

0.817

PLK1

0.776

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNB2	CPEB4	ENSLBEP00000025686	ENSLBEP00000002193	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 4.	0.834
CCNB2	LOC109982502	ENSLBEP00000025686	ENSLBEP00000030006	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 2.	0.817
CCNB2	LOC109992113	ENSLBEP00000025686	ENSLBEP00000024564	Cyclin B2; Belongs to the cyclin family.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.850
CCNB2	LOC109998436	ENSLBEP00000025686	ENSLBEP00000034546	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 3.	0.834
CCNB2	LOC110004130	ENSLBEP00000025686	ENSLBEP00000036056	Cyclin B2; Belongs to the cyclin family.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.800
CCNB2	PLK1	ENSLBEP00000025686	ENSLBEP00000011329	Cyclin B2; Belongs to the cyclin family.	Serine/threonine-protein kinase PLK.	0.951
CCNB2	aurka	ENSLBEP00000025686	ENSLBEP00000016463	Cyclin B2; Belongs to the cyclin family.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.800
CCNB2	cdk1	ENSLBEP00000025686	ENSLBEP00000019816	Cyclin B2; Belongs to the cyclin family.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.980
CCNB2	cpeb1	ENSLBEP00000025686	ENSLBEP00000022627	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 1b.	0.872
CPEB4	CCNB2	ENSLBEP00000002193	ENSLBEP00000025686	Cytoplasmic polyadenylation element binding protein 4.	Cyclin B2; Belongs to the cyclin family.	0.834
CPEB4	LOC109982502	ENSLBEP00000002193	ENSLBEP00000030006	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 2.	0.876
CPEB4	LOC109992113	ENSLBEP00000002193	ENSLBEP00000024564	Cytoplasmic polyadenylation element binding protein 4.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.842
CPEB4	LOC110001534	ENSLBEP00000002193	ENSLBEP00000007532	Cytoplasmic polyadenylation element binding protein 4.	Cyclin B2; Belongs to the cyclin family.	0.834
CPEB4	LOC110004130	ENSLBEP00000002193	ENSLBEP00000036056	Cytoplasmic polyadenylation element binding protein 4.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.846
CPEB4	PLK1	ENSLBEP00000002193	ENSLBEP00000011329	Cytoplasmic polyadenylation element binding protein 4.	Serine/threonine-protein kinase PLK.	0.864
CPEB4	aurka	ENSLBEP00000002193	ENSLBEP00000016463	Cytoplasmic polyadenylation element binding protein 4.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.867
CPEB4	cdk1	ENSLBEP00000002193	ENSLBEP00000019816	Cytoplasmic polyadenylation element binding protein 4.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.868
CPEB4	cpeb1	ENSLBEP00000002193	ENSLBEP00000022627	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 1b.	0.887
LOC109982502	CCNB2	ENSLBEP00000030006	ENSLBEP00000025686	Cytoplasmic polyadenylation element binding protein 2.	Cyclin B2; Belongs to the cyclin family.	0.817
LOC109982502	CPEB4	ENSLBEP00000030006	ENSLBEP00000002193	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 4.	0.876