STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110001933SMP-LTD domain-containing protein. (249 aa)    
Predicted Functional Partners:
ENSLBEP00000035051
Extended synaptotagmin-like protein 2a.
 
      0.898
ENSLBEP00000033866
Uncharacterized protein.
   
 0.850
ENSLBEP00000004755
Uncharacterized protein.
    
 0.698
ENSLBEP00000004788
Uncharacterized protein.
    
 0.698
LOC109990056
Intersectin 2a.
    
 0.698
LOC109987944
Intersectin 1 (SH3 domain protein).
    
 0.698
LOC109982347
Platelet-activating factor acetylhydrolase.
     
 0.674
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
     
 0.673
pisd
Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.
   
 
 0.659
fads2
Fatty acid desaturase 2.
   
 
  0.640
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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