STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109983365DiGeorge syndrome critical region gene 6. (194 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
  
 0.612
mrpl40
Mitochondrial ribosomal protein L40.
   
  
 0.516
cunh22orf39
Si:ch211-51h9.6.
      
 0.507
bloc1s3
Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.
      
 0.495
LOC109994304
Si:dkey-51e6.1.
   
  
 0.485
LOC109985676
Phosphohistidine phosphatase 1.
   
  
 0.485
mrpl28
Mitochondrial ribosomal protein L28.
   
    0.451
NDUFB7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.443
LOC110000674
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like.
   
    0.443
gnb1l
Guanine nucleotide binding protein (G protein), beta polypeptide 1-like.
   
  
 0.441
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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