STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip6Tumor necrosis factor, alpha-induced protein 6. (263 aa)    
Predicted Functional Partners:
LOC109989974
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.894
ptx3
Pentraxin 3, long b.
   
 
 0.839
il1b
Interleukin-1.
   
 0.814
LOC109986980
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.782
col22a1
Collagen, type XXII, alpha 1.
    
 0.682
chrd
Chordin.
    
 
 0.678
ENSLBEP00000006601
Hyaluronan binding protein 2.
    
 0.652
LOC109987245
Uncharacterized protein.
    
 0.652
hgfac
HGF activator.
    
 0.644
LOC109995438
Interleukin 1 receptor like 1.
    
 0.618
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.