STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109991551Si:dkey-193c22.2. (2377 aa)    
Predicted Functional Partners:
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.608
chst11
Carbohydrate sulfotransferase.
    
 0.574
csgalnact2
Hexosyltransferase.
     
 0.555
hspg2
Heparan sulfate proteoglycan 2.
   
 
0.543
LOC109985580
Agrin.
   
 
0.540
chst7
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.538
chst1
Sulfotransferase; Belongs to the sulfotransferase 1 family.
     
 0.530
chpf
Hexosyltransferase.
     
 0.529
chpf2
Hexosyltransferase.
     
 0.529
LOC109985538
Glypican 6a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
   
 
 0.512
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.