LOC109982881 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109982881

Uncharacterized protein. (396 aa)

Predicted Functional Partners:

ripk1

0.970

tradd

0.968

fadd

0.948

LOC109993620

0.935

LOC109991608

0.935

LOC109996590

0.926

LOC109995112

0.922

LOC109998929

0.922

LOC109998212

0.918

LOC109992051

0.902

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109982881	LOC109991608	ENSLBEP00000030967	ENSLBEP00000033093	Uncharacterized protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.935
LOC109982881	LOC109992051	ENSLBEP00000030967	ENSLBEP00000022084	Uncharacterized protein.	Tumor necrosis factor b (TNF superfamily, member 2).	0.902
LOC109982881	LOC109993620	ENSLBEP00000030967	ENSLBEP00000016191	Uncharacterized protein.	Tumor necrosis factor a (TNF superfamily, member 2); Belongs to the tumor necrosis factor family.	0.935
LOC109982881	LOC109995112	ENSLBEP00000030967	ENSLBEP00000001259	Uncharacterized protein.	TNF receptor-associated factor.	0.922
LOC109982881	LOC109996590	ENSLBEP00000030967	ENSLBEP00000023058	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.926
LOC109982881	LOC109998212	ENSLBEP00000030967	ENSLBEP00000020099	Uncharacterized protein.	Baculoviral IAP repeat containing 2.	0.918
LOC109982881	LOC109998929	ENSLBEP00000030967	ENSLBEP00000030749	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.922
LOC109982881	fadd	ENSLBEP00000030967	ENSLBEP00000028812	Uncharacterized protein.	Uncharacterized protein.	0.948
LOC109982881	ripk1	ENSLBEP00000030967	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.970
LOC109982881	tradd	ENSLBEP00000030967	ENSLBEP00000032329	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.968
LOC109991608	LOC109982881	ENSLBEP00000033093	ENSLBEP00000030967	Inhibitor of nuclear factor kappa B kinase subunit beta.	Uncharacterized protein.	0.935
LOC109991608	LOC109995112	ENSLBEP00000033093	ENSLBEP00000001259	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF receptor-associated factor.	0.841
LOC109991608	LOC109996590	ENSLBEP00000033093	ENSLBEP00000023058	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.841
LOC109991608	LOC109998212	ENSLBEP00000033093	ENSLBEP00000020099	Inhibitor of nuclear factor kappa B kinase subunit beta.	Baculoviral IAP repeat containing 2.	0.670
LOC109991608	LOC109998929	ENSLBEP00000033093	ENSLBEP00000030749	Inhibitor of nuclear factor kappa B kinase subunit beta.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.841
LOC109991608	fadd	ENSLBEP00000033093	ENSLBEP00000028812	Inhibitor of nuclear factor kappa B kinase subunit beta.	Uncharacterized protein.	0.618
LOC109991608	ripk1	ENSLBEP00000033093	ENSLBEP00000022169	Inhibitor of nuclear factor kappa B kinase subunit beta.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.907
LOC109991608	tradd	ENSLBEP00000033093	ENSLBEP00000032329	Inhibitor of nuclear factor kappa B kinase subunit beta.	Tnfrsf1a-associated via death domain.	0.884
LOC109992051	LOC109982881	ENSLBEP00000022084	ENSLBEP00000030967	Tumor necrosis factor b (TNF superfamily, member 2).	Uncharacterized protein.	0.902
LOC109992051	LOC109993620	ENSLBEP00000022084	ENSLBEP00000016191	Tumor necrosis factor b (TNF superfamily, member 2).	Tumor necrosis factor a (TNF superfamily, member 2); Belongs to the tumor necrosis factor family.	0.848