STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNMTmRNA cap guanine-N7 methyltransferase. (431 aa)    
Predicted Functional Partners:
ENSLBEP00000032572
Uncharacterized protein.
   
 
 0.917
LOC110001971
Uncharacterized protein.
    
 0.908
ENSLBEP00000015894
Uncharacterized protein.
    
 0.886
rngtt
Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.
   
 0.879
LOC110000700
Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting).
   
 0.804
ENSLBEP00000032499
TYR_PHOSPHATASE_2 domain-containing protein.
   
 0.804
ENSLBEP00000022152
Uncharacterized protein.
    
 0.778
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.778
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.775
ENSLBEP00000003079
Uncharacterized protein.
    
 0.774
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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