STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110002719Transporter associated with antigen processing, subunit type a. (819 aa)    
Predicted Functional Partners:
pdia3
Protein disulfide-isomerase.
  
 0.885
LOC109982559
Calreticulin.
   
 0.880
LOC110000615
Calreticulin.
   
 0.880
LOC109981067
Calreticulin.
   
 0.880
LOC109988836
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
 
0.875
LOC110002717
Proteasome subunit beta 12.
   
0.875
LOC109997281
Protein disulfide-isomerase.
  
  0.874
ENSLBEP00000018525
Uncharacterized protein.
   
 0.861
ENSLBEP00000019877
Ig-like domain-containing protein.
   
 0.861
ENSLBEP00000023388
Ig-like domain-containing protein.
   
 0.861
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.