LOC109993900 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109993900

Phosducin domain-containing protein. (239 aa)

Predicted Functional Partners:

LOC109982495

0.916

GNB5

0.911

gnb5

0.911

LOC109997502

0.889

LOC109991366

0.875

LOC109976009

0.864

LOC109995047

0.849

LOC109997068

0.847

LOC109980570

0.847

gnb1

0.839

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB5	LOC109980570	ENSLBEP00000012000	ENSLBEP00000030291	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.744
GNB5	LOC109982495	ENSLBEP00000012000	ENSLBEP00000031077	G protein subunit beta 5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.953
GNB5	LOC109991366	ENSLBEP00000012000	ENSLBEP00000022188	G protein subunit beta 5.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.751
GNB5	LOC109993900	ENSLBEP00000012000	ENSLBEP00000032009	G protein subunit beta 5.	Phosducin domain-containing protein.	0.911
GNB5	LOC109995047	ENSLBEP00000012000	ENSLBEP00000036388	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.739
GNB5	LOC109997068	ENSLBEP00000012000	ENSLBEP00000021912	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.739
LOC109976009	LOC109982495	ENSLBEP00000023654	ENSLBEP00000031077	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.846
LOC109976009	LOC109991366	ENSLBEP00000023654	ENSLBEP00000022188	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.728
LOC109976009	LOC109993900	ENSLBEP00000023654	ENSLBEP00000032009	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	Phosducin domain-containing protein.	0.864
LOC109980570	GNB5	ENSLBEP00000030291	ENSLBEP00000012000	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	G protein subunit beta 5.	0.744
LOC109980570	LOC109982495	ENSLBEP00000030291	ENSLBEP00000031077	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.988
LOC109980570	LOC109991366	ENSLBEP00000030291	ENSLBEP00000022188	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.742
LOC109980570	LOC109993900	ENSLBEP00000030291	ENSLBEP00000032009	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Phosducin domain-containing protein.	0.847
LOC109980570	gnb5	ENSLBEP00000030291	ENSLBEP00000021619	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), beta 5a.	0.743
LOC109982495	GNB5	ENSLBEP00000031077	ENSLBEP00000012000	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	G protein subunit beta 5.	0.953
LOC109982495	LOC109976009	ENSLBEP00000031077	ENSLBEP00000023654	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.846
LOC109982495	LOC109980570	ENSLBEP00000031077	ENSLBEP00000030291	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.988
LOC109982495	LOC109993900	ENSLBEP00000031077	ENSLBEP00000032009	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosducin domain-containing protein.	0.916
LOC109982495	LOC109995047	ENSLBEP00000031077	ENSLBEP00000036388	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.986
LOC109982495	LOC109997068	ENSLBEP00000031077	ENSLBEP00000021912	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.986