STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109994974Family with sequence similarity 8 member A1b. (332 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.710
AMFR
Autocrine motility factor receptor b.
    
 
 0.666
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.666
LOC109984849
Uncharacterized protein.
    
 
 0.665
rnf145
Ring finger protein 145b.
    
 
 0.586
LOC110004275
Zmp:0000000662.
    
 
 0.586
rnf139
Ring finger protein 139.
    
 
 0.577
chfr
Checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase.
    
   0.560
ENSLBEP00000031774
Uncharacterized protein.
    
   0.560
erlec1
Endoplasmic reticulum lectin 1.
    
 
 0.430
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.