Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSLBEP00000020673 | LOC109979207 | ENSLBEP00000020673 | ENSLBEP00000016612 | RecQ helicase-like 4. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.894 |
ENSLBEP00000020673 | dna2 | ENSLBEP00000020673 | ENSLBEP00000011436 | RecQ helicase-like 4. | DNA replication helicase/nuclease 2. | 0.979 |
ENSLBEP00000020673 | exo1 | ENSLBEP00000020673 | ENSLBEP00000032385 | RecQ helicase-like 4. | Exonuclease 1. | 0.997 |
ENSLBEP00000020673 | mlh1 | ENSLBEP00000020673 | ENSLBEP00000017339 | RecQ helicase-like 4. | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.973 |
ENSLBEP00000020673 | mre11 | ENSLBEP00000020673 | ENSLBEP00000034173 | RecQ helicase-like 4. | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.982 |
ENSLBEP00000020673 | msh6 | ENSLBEP00000020673 | ENSLBEP00000021414 | RecQ helicase-like 4. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.894 |
ENSLBEP00000020673 | pcna | ENSLBEP00000020673 | ENSLBEP00000019477 | RecQ helicase-like 4. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.939 |
ENSLBEP00000020673 | pms2 | ENSLBEP00000020673 | ENSLBEP00000012742 | RecQ helicase-like 4. | PMS1 homolog 2, mismatch repair system component. | 0.808 |
ENSLBEP00000020673 | rad51 | ENSLBEP00000020673 | ENSLBEP00000034226 | RecQ helicase-like 4. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.989 |
LOC109979207 | ENSLBEP00000020673 | ENSLBEP00000016612 | ENSLBEP00000020673 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | RecQ helicase-like 4. | 0.894 |
LOC109979207 | blm | ENSLBEP00000016612 | ENSLBEP00000024461 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. | 0.908 |
LOC109979207 | dna2 | ENSLBEP00000016612 | ENSLBEP00000011436 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA replication helicase/nuclease 2. | 0.624 |
LOC109979207 | exo1 | ENSLBEP00000016612 | ENSLBEP00000032385 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Exonuclease 1. | 0.984 |
LOC109979207 | mlh1 | ENSLBEP00000016612 | ENSLBEP00000017339 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). | 0.990 |
LOC109979207 | mre11 | ENSLBEP00000016612 | ENSLBEP00000034173 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. | 0.675 |
LOC109979207 | pcna | ENSLBEP00000016612 | ENSLBEP00000019477 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.992 |
LOC109979207 | pms2 | ENSLBEP00000016612 | ENSLBEP00000012742 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | PMS1 homolog 2, mismatch repair system component. | 0.990 |
LOC109979207 | rad51 | ENSLBEP00000016612 | ENSLBEP00000034226 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.705 |
blm | LOC109979207 | ENSLBEP00000024461 | ENSLBEP00000016612 | ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.908 |
blm | dna2 | ENSLBEP00000024461 | ENSLBEP00000011436 | ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. | DNA replication helicase/nuclease 2. | 0.980 |
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