STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
herpud2HERPUD family member 2. (417 aa)    
Predicted Functional Partners:
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.603
AMFR
Autocrine motility factor receptor b.
   
 
 0.598
LOC109991266
Activating transcription factor 4a.
   
 
 0.551
LOC109984849
Uncharacterized protein.
   
 
 0.477
LOC109996988
Activating transcription factor 4b.
   
 
 0.442
ATF4
Activating transcription factor 4.
   
 
 0.442
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.424
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.