STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109985888Short chain dehydrogenase/reductase family 42E, member 2. (402 aa)    
Predicted Functional Partners:
LOC109995412
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.713
gss
Glutathione synthetase.
     
 0.675
ENSLBEP00000009123
Uncharacterized protein.
    
 0.673
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.576
GSTO1
Glutathione S-transferase omega 1; Belongs to the GST superfamily.
     
 0.573
LOC109975129
Uncharacterized protein.
     
 0.573
LOC109999753
Uncharacterized protein.
    
 0.572
LOC109982849
Glutathione S-transferase mu, tandem duplicate 1.
    
 0.572
LOC109982570
Peroxiredoxin 6.
    
 0.551
PRDX6
Peroxiredoxin 6.
    
 0.551
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.