STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109982935Uncharacterized protein. (292 aa)    
Predicted Functional Partners:
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.836
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.814
mad1l1
Mitotic arrest deficient 1 like 1.
    
 0.813
tex10
Testis expressed 10.
   
 0.808
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.808
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.805
LOC109998333
Anaphase promoting complex subunit 1.
    
 0.803
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.800
LOC109995253
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.799
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.798
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.