STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rprd1aRegulation of nuclear pre-mRNA domain containing 1A. (308 aa)    
Predicted Functional Partners:
POLR2B-2
RNA polymerase II subunit B.
   
 0.965
POLR2B
RNA polymerase II subunit B.
   
 0.965
ENSLBEP00000022152
Uncharacterized protein.
    
 0.961
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.961
ENSLBEP00000003079
Uncharacterized protein.
    
 0.960
DXO
Decapping exoribonuclease.
    
 
 0.957
rpap2
RNA polymerase II associated protein 2.
   
 0.933
xrn2
5'-3' exoribonuclease 2.
    
 
 0.925
LOC110000255
XRN_M domain-containing protein.
    
 
 0.925
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.908
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.