STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109997925Tetraspanin. (249 aa)    
Predicted Functional Partners:
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.688
mst1r
Macrophage stimulating 1 receptor b.
    
  0.688
LOC109980643
Macrophage stimulating 1 receptor a.
    
  0.688
gria2
Glutamate receptor, ionotropic, AMPA 2b.
   
 
  0.455
ENSLBEP00000020718
PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
 
  0.455
ENSLBEP00000023398
Uncharacterized protein.
   
 
  0.455
igsf8
Immunoglobulin superfamily, member 8.
    
 
 0.446
LOC109996964
Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.
    
  0.442
LOC109992014
Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.
    
  0.442
ptgfrn
Si:ch211-132g1.7.
    
 
 0.442
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.