STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSNK1DCasein kinase 1 delta; Belongs to the protein kinase superfamily. (414 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.973
bysl
Uncharacterized protein.
    
 0.940
riok2
RIO kinase 2 (yeast).
    
 0.933
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
  
 
0.928
tsr1
TSR1 ribosome maturation factor.
    
 0.905
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.892
PER2
Period circadian regulator 2.
    
 0.877
LOC109984249
Period circadian clock 3.
    
 0.877
LOC109991432
Period circadian clock 2.
    
 0.877
LOC109980730
Period circadian clock 1b.
    
 0.877
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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