STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpf1Ribosome production factor 1 homolog. (357 aa)    
Predicted Functional Partners:
wdr74
WD repeat domain 74.
   
 
 0.999
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 
 0.999
brix1
Brix domain containing 2.
   
 
 0.998
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.997
nip7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.996
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.996
RRP1
Ribosomal RNA processing 1.
   
 
 0.996
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.995
wdr12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.995
rpf2
Ribosome production factor 2 homolog.
   
 
 0.995
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.