STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109997959Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family. (670 aa)    
Predicted Functional Partners:
cast
Uncharacterized protein.
   
 0.878
capns1
Calpain, small subunit 1 b.
   
0.851
LOC109991812
Uncharacterized protein.
    
  0.825
bax
BCL2 associated X, apoptosis regulator a.
    
  0.825
LOC109997964
Uncharacterized protein; Belongs to the peptidase C2 family.
  
  
 
0.781
LOC109988766
Zgc:55262; Belongs to the peptidase C2 family.
  
 
 
0.672
ENSLBEP00000022374
Uncharacterized protein.
    
  0.658
LOC109998905
Uncharacterized protein.
    
  0.658
LOC109998896
Zgc:153993.
    
  0.658
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.611
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.