STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110000238Usher syndrome 1C binding protein 1. (696 aa)    
Predicted Functional Partners:
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.993
utp4
UTP4 small subunit processome component.
   
 0.992
wdr43
WD repeat domain 43.
   
 0.990
utp15
UTP15 small subunit processome component.
   
 0.990
nol6
Nucleolar protein 6.
   
 0.988
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.987
wdr75
WD repeat domain 75.
   
 0.987
LOC109989026
BMS1 ribosome biogenesis factor.
   
 0.986
LOC109984156
PWP2 small subunit processome component.
   
 
 0.985
utp6
UTP6 small subunit processome component.
   
 
 0.982
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.