cep83 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cep83

Centrosomal protein 83. (721 aa)

Predicted Functional Partners:

ift20

0.799

stx5

0.775

uso1

0.747

tubg1

0.746

ckap5

0.727

golga2

0.722

hcfc1

0.718

hcfc2

0.718

LOC109985342

0.717

gosr1

0.717

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109985342	cep83	ENSLBEP00000000515	ENSLBEP00000036911	Uncharacterized protein.	Centrosomal protein 83.	0.717
LOC109985342	golga2	ENSLBEP00000000515	ENSLBEP00000024378	Uncharacterized protein.	Golgin A2.	0.969
LOC109985342	gosr1	ENSLBEP00000000515	ENSLBEP00000036458	Uncharacterized protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.841
LOC109985342	stx5	ENSLBEP00000000515	ENSLBEP00000008692	Uncharacterized protein.	Syntaxin 5A; Belongs to the syntaxin family.	0.993
LOC109985342	uso1	ENSLBEP00000000515	ENSLBEP00000021276	Uncharacterized protein.	USO1 vesicle transport factor.	0.974
cep83	LOC109985342	ENSLBEP00000036911	ENSLBEP00000000515	Centrosomal protein 83.	Uncharacterized protein.	0.717
cep83	ckap5	ENSLBEP00000036911	ENSLBEP00000010691	Centrosomal protein 83.	Cytoskeleton associated protein 5.	0.727
cep83	golga2	ENSLBEP00000036911	ENSLBEP00000024378	Centrosomal protein 83.	Golgin A2.	0.722
cep83	gosr1	ENSLBEP00000036911	ENSLBEP00000036458	Centrosomal protein 83.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.717
cep83	hcfc1	ENSLBEP00000036911	ENSLBEP00000023615	Centrosomal protein 83.	Host cell factor C1a.	0.718
cep83	hcfc2	ENSLBEP00000036911	ENSLBEP00000036839	Centrosomal protein 83.	Host cell factor C2.	0.718
cep83	ift20	ENSLBEP00000036911	ENSLBEP00000011222	Centrosomal protein 83.	Intraflagellar transport 20 homolog (Chlamydomonas).	0.799
cep83	stx5	ENSLBEP00000036911	ENSLBEP00000008692	Centrosomal protein 83.	Syntaxin 5A; Belongs to the syntaxin family.	0.775
cep83	tubg1	ENSLBEP00000036911	ENSLBEP00000030304	Centrosomal protein 83.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.746
cep83	uso1	ENSLBEP00000036911	ENSLBEP00000021276	Centrosomal protein 83.	USO1 vesicle transport factor.	0.747
ckap5	cep83	ENSLBEP00000010691	ENSLBEP00000036911	Cytoskeleton associated protein 5.	Centrosomal protein 83.	0.727
ckap5	tubg1	ENSLBEP00000010691	ENSLBEP00000030304	Cytoskeleton associated protein 5.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.668
golga2	LOC109985342	ENSLBEP00000024378	ENSLBEP00000000515	Golgin A2.	Uncharacterized protein.	0.969
golga2	cep83	ENSLBEP00000024378	ENSLBEP00000036911	Golgin A2.	Centrosomal protein 83.	0.722
golga2	gosr1	ENSLBEP00000024378	ENSLBEP00000036458	Golgin A2.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.987