STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsm12LSM12 homolog b. (196 aa)    
Predicted Functional Partners:
atxn2l
Ataxin 2-like.
    
 0.985
ENSLBEP00000022837
Ataxin 2.
    
 0.985
ENSLBEP00000022895
Ataxin 2.
    
 0.985
LOC109987822
LsmAD domain-containing protein.
    
 0.985
LOC109996290
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
    
 
 0.902
LOC109990211
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.902
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6.
    
 
 0.902
trnau1ap
tRNA selenocysteine 1 associated protein 1a.
    
 
 0.884
LOC109981000
tRNA selenocysteine 1 associated protein 1b.
    
 
 0.884
nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.787
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.