STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJTrmH family RNA methyltransferase protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (276 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.806
cysS
cysteinyl-tRNA synthetase; Protein involved in nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding and tRNA aminoacylation for protein translation; Belongs to the class-I aminoacyl-tRNA synthetase family.
     0.674
rlmE
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.582
APO67824.1
Hypothetical protein.
       0.580
pncA
Nicotinamidase; Protein involved in catalytic activity and metabolic process.
 
      0.579
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.558
APO67827.1
Hypothetical protein.
       0.520
truB
tRNA pseudouridine(55) synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
   
 0.458
rpsU-1
30S ribosomal protein S21 1; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.451
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.446
Your Current Organism:
Rhizobium gallicum
NCBI taxonomy Id: 56730
Other names: R. gallicum, bacterium ISSDS-850, strain R602sp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.