STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAProtein involved in xylose isomerase activity and carbohydrate metabolic process; Belongs to the xylose isomerase family. (436 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Protein involved in phosphotransferase activity, alcohol group as acceptor and carbohydrate metabolic process.
 
 
 0.991
mtlK
Mannitol 2-dehydrogenase; Protein involved in nucleotide binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, coenzyme binding and oxidation-reduction process; Belongs to the mannitol dehydrogenase family.
    
 0.914
frk
Fructokinase.
    
 0.911
lacZ
beta-D-galactosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.835
glk
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.815
xynB
Beta-xylosidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.739
xylF
Xylose ABC transporter substrate-binding protein XylF.
 
  
 0.650
APO69283.1
LacI family transcriptional regulator protein; Protein involved in DNA binding.
 
   
 0.642
galM-1
Aldose-1-epimerase 1; Converts alpha-aldose to the beta-anomer.
 
  
 0.513
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
     
 0.410
Your Current Organism:
Rhizobium gallicum
NCBI taxonomy Id: 56730
Other names: R. gallicum, bacterium ISSDS-850, strain R602sp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.