STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ07719.1Transcriptional regulator, GntR family. (243 aa)    
Predicted Functional Partners:
SIQ95202.1
DNA-binding transcriptional regulator, FadR family.
  
    0.690
SIQ40655.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.685
SIQ85681.1
PTS system D-glucosamine-specific IIA component, Glc family /PTS system D-glucosamine-specific IIB component, Glc family /PTS system D-glucosamine-specific IIC component, Glc family.
  
 
 0.602
SIQ07752.1
DNA translocase FtsK.
     
 0.558
SIQ07688.1
Nucleoside-binding protein.
  
    0.525
SIQ32485.1
Transcriptional regulator, GntR family.
  
     0.522
SIR43300.1
N-acetylglucosamine 6-phosphate deacetylase.
 
  
 0.491
SIQ13356.1
AraC-type DNA-binding protein.
   
  
 0.462
SIQ24469.1
AraC-like ligand binding domain-containing protein.
   
  
 0.462
SIQ35665.1
Transcriptional regulator, AraC family.
   
  
 0.462
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.