STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ53939.14-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis. (181 aa)    
Predicted Functional Partners:
rpsJ
Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.802
SIQ53892.1
Mechanosensitive ion channel.
       0.781
SIQ87851.1
Hydroxyacylglutathione hydrolase.
   
 0.755
SIR10426.1
Protease I.
  
     0.753
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.713
SIQ13394.1
ATP-binding cassette, subfamily B, MsbA.
  
  0.702
SIQ17548.1
ATP-binding cassette, subfamily B.
  
  0.702
SIQ17592.1
ATP-binding cassette, subfamily B.
  
  0.702
SIR41804.1
ATP-binding cassette, subfamily B.
  
  0.702
SIR51652.1
ATP-binding cassette, subfamily B, MsbA.
  
  0.702
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.