STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ59545.1Cupin domain protein. (111 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 0.657
SIR38276.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.589
SIQ59497.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
  
  
 0.536
SIQ43877.1
AraC-like ligand binding domain-containing protein.
  
 0.526
SIQ24429.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.478
SIQ59593.1
Nucleoside-diphosphate-sugar epimerase.
  
    0.462
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.461
SIQ59640.1
HD domain-containing protein.
       0.459
SIQ24650.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.444
xylB
Xylulokinase.
  
 
 0.429
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.