STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ68694.1Trk system potassium uptake protein TrkH. (440 aa)    
Predicted Functional Partners:
SIQ68735.1
Trk system potassium uptake protein TrkA.
 
 
 0.989
SIQ06459.1
Trk system potassium uptake protein TrkA.
 
 
 0.966
SIQ68897.1
Trk system potassium uptake protein TrkA.
  
 
 0.777
SIQ68934.1
Trk system potassium uptake protein TrkA.
  
 
 0.777
SIQ68855.1
Tetratricopeptide repeat-containing protein.
       0.574
SIQ09800.1
Trk system potassium uptake protein TrkA.
  
 
 0.566
SIQ68976.1
Trk system potassium uptake protein TrkH.
     
0.537
SIQ68776.1
Signal transduction histidine kinase.
       0.511
SIQ68816.1
Response regulator receiver domain-containing protein.
     
 0.511
SIQ40655.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.475
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.