STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ95386.1S-layer homology domain-containing protein. (642 aa)    
Predicted Functional Partners:
SIR50966.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
  
 0.792
SIQ40955.1
LPS export ABC transporter permease LptF/LPS export ABC transporter permease LptG,TIGR04408.
 
   
 0.785
SIR33517.1
Protein of unknown function.
 
     0.770
SIR34349.1
Hypothetical protein.
  
     0.763
SIR34386.1
Polysaccharide pyruvyl transferase CsaB.
  
   
 0.755
SIR33551.1
RNase H-fold protein, predicted Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.741
SIR34028.1
Stage II sporulation protein.
  
     0.741
SIQ46527.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.726
SIR33479.1
Lipopolysaccharide export system permease protein.
  
     0.724
SIQ71327.1
Transcriptional attenuator, LytR family.
  
   
 0.721
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.