STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR08418.1Putative ABC transport system substrate-binding protein. (324 aa)    
Predicted Functional Partners:
SIR08454.1
Putative ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
    0.994
SIR08491.1
Putative ABC transport system ATP-binding protein.
 
    0.933
SIR08556.1
Trehalose/maltose transport system permease protein.
     
  0.900
SIR54681.1
PAS domain S-box-containing protein.
    
  0.887
SIR54706.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
    
  0.707
SIQ61356.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.694
SIQ63043.1
Flagellar motor switch protein FliN/FliY.
   
 
  0.678
SIQ28407.1
PAS domain S-box-containing protein.
    
  0.676
SIQ41324.1
Methyl-accepting chemotaxis protein.
    
  0.656
SIR08377.1
HutP protein.
       0.500
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
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