STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR34028.1Stage II sporulation protein. (719 aa)    
Predicted Functional Partners:
SIR33586.1
S-layer homology domain-containing protein.
  
     0.751
SIQ95386.1
S-layer homology domain-containing protein.
  
     0.741
SIR34386.1
Polysaccharide pyruvyl transferase CsaB.
 
     0.719
SIR34349.1
Hypothetical protein.
 
     0.690
SIR33517.1
Protein of unknown function.
  
     0.643
SIQ71327.1
Transcriptional attenuator, LytR family.
 
     0.634
SIQ06694.1
S-layer homology domain-containing protein.
  
     0.614
SIQ46446.1
Translocation and assembly module TamB.
  
     0.599
SIR33551.1
RNase H-fold protein, predicted Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.596
SIQ40955.1
LPS export ABC transporter permease LptF/LPS export ABC transporter permease LptG,TIGR04408.
 
     0.593
Your Current Organism:
Halanaerobium kushneri
NCBI taxonomy Id: 56779
Other names: ATCC 700103, H. kushneri, Haloanaerobium kushneri, strain VS-751
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