STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_00021Alcohol dehydrogenase, class IV. (404 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
    
 0.921
SYN_00024
ABC transporter ATP-binding protein.
  
  
 0.791
SYN_00022
ABC transporter permease protein.
  
    0.776
SYN_00023
ABC transporter permease protein.
  
    0.776
SYN_01159
Alcohol dehydrogenase.
  
 
 0.776
SYN_01655
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase.
  
 
 0.776
SYN_00020
Hypothetical cytosolic protein.
       0.756
SYN_00025
hlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.743
SYN_00877
Glycogen synthase.
  
  
 0.733
SYN_02056
degT/dnrJ/eryC1/strS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
   
 0.725
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.