Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYN_00213 | bioB | SYN_00213 | SYN_00212 | Hypothetical cytosolic protein. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.773 |
SYN_00213 | birA | SYN_00213 | SYN_00211 | Hypothetical cytosolic protein. | biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.545 |
SYN_00565 | SYN_02134 | SYN_00565 | SYN_02134 | 2-amino-3-ketobutyrate coenzyme A ligase. | Biotin synthase. | 0.659 |
SYN_00565 | bioA | SYN_00565 | SYN_02563 | 2-amino-3-ketobutyrate coenzyme A ligase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.837 |
SYN_00565 | bioB | SYN_00565 | SYN_00212 | 2-amino-3-ketobutyrate coenzyme A ligase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.804 |
SYN_00565 | bioD | SYN_00565 | SYN_02569 | 2-amino-3-ketobutyrate coenzyme A ligase. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.904 |
SYN_00565 | birA | SYN_00565 | SYN_00211 | 2-amino-3-ketobutyrate coenzyme A ligase. | biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.558 |
SYN_00570 | argD | SYN_00570 | SYN_02155 | Acetylornithine aminotransferase / Succinyldiaminopimelate aminotransferase; Bifunctional; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.913 |
SYN_00570 | bioB | SYN_00570 | SYN_00212 | Acetylornithine aminotransferase / Succinyldiaminopimelate aminotransferase; Bifunctional; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.806 |
SYN_02134 | SYN_00565 | SYN_02134 | SYN_00565 | Biotin synthase. | 2-amino-3-ketobutyrate coenzyme A ligase. | 0.659 |
SYN_02134 | SYN_02568 | SYN_02134 | SYN_02568 | Biotin synthase. | 8-amino-7-oxononanoate synthase. | 0.659 |
SYN_02134 | SYN_02884 | SYN_02134 | SYN_02884 | Biotin synthase. | Biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase. | 0.917 |
SYN_02134 | bioA | SYN_02134 | SYN_02563 | Biotin synthase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.785 |
SYN_02134 | bioB | SYN_02134 | SYN_00212 | Biotin synthase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.900 |
SYN_02134 | bioD | SYN_02134 | SYN_02569 | Biotin synthase. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.984 |
SYN_02134 | birA | SYN_02134 | SYN_00211 | Biotin synthase. | biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.953 |
SYN_02568 | SYN_02134 | SYN_02568 | SYN_02134 | 8-amino-7-oxononanoate synthase. | Biotin synthase. | 0.659 |
SYN_02568 | bioA | SYN_02568 | SYN_02563 | 8-amino-7-oxononanoate synthase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.994 |
SYN_02568 | bioB | SYN_02568 | SYN_00212 | 8-amino-7-oxononanoate synthase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.901 |
SYN_02568 | bioD | SYN_02568 | SYN_02569 | 8-amino-7-oxononanoate synthase. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.987 |
page 1 of 3