STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYN_00249Hypothetical cytosolic protein. (340 aa)    
Predicted Functional Partners:
SYN_00250
Glycosyltransferase.
     0.989
SYN_02905
Sporulation related protein.
     0.979
SYN_02904
ampG protein.
 
     0.762
SYN_02612
Hypothetical cytosolic protein.
  
     0.729
miaA1
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
     0.588
SYN_00618
Hypothetical cytosolic protein.
  
     0.542
SYN_01970
Hypothetical cytosolic protein.
  
     0.538
SYN_02902
Predicted phosphotransferase related to Ser/Thr protein kinases.
  
     0.515
SYN_02541
Membrane spanning protein ribonuclease BN-like family.
  
     0.508
SYN_01420
Hypothetical cytosolic protein.
  
     0.446
Your Current Organism:
Syntrophus aciditrophicus
NCBI taxonomy Id: 56780
Other names: S. aciditrophicus SB, Syntrophus aciditrophicus SB, Syntrophus aciditrophicus str. SB, Syntrophus aciditrophicus strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.